More specifically, one lossisLalpha = C 1 thatencourages aminimal alpha mask butmight result inagrainymask, so the other loss isLdiv = d, i.e., minimizing the divergence of the distance field to achieve more smooth/continuous alphamask.

We propose a novel neural network-based approach to modeling protein dynamics using an implicit representation of a protein's surface in 3D and time. Our method utilizes the zero-level set of signed distance functions (SDFs) to represent protein surfaces, enabling temporally and spatially continuous representations of protein dynamics. Our experimental results demonstrate that our model accurately captures protein dynamic trajectories and can interpolate and extrapolate in 3D and time. Importantly, this is the first study to introduce this method and successfully model large-scale protein dynamics. This approach offers a promising alternative to current methods, overcoming the limitations of first-principles-based and deep learning methods, and provides a more scalable and efficient approach to modeling protein dynamics. Additionally, our surface representation approach simplifies calculations and allows identifying movement trends and amplitudes of protein domains, making it a useful tool for protein dynamics research. Codes are available at https://github.com/Sundw-818/DSR,

Deep Equilibrium Model (DEQ), which serves as a typical implicit neural network, emphasizes their memory efficiency and competitive performance compared to explicit neural networks. However, there has been relatively limited theoretical analysis on the representation of DEQ. In this paper, we utilize the Neural Collapse ($\mathcal{NC}$) as a tool to systematically analyze the representation of DEQ under both balanced and imbalanced conditions.

Implicit neural networks, a.k.a., deep equilibrium networks, are a class of implicit-depth learning models where function evaluation is performed by solving a fixed

Deep Equilibrium Model (DEQ), which serves as a typical implicit neural network, emphasizes their memory efficiency and competitive performance compared to explicit neural networks. However, there has been relatively limited theoretical analysis on the representation of DEQ. In this paper, we utilize the Neural Collapse ( \mathcal{NC}) as a tool to systematically analyze the representation of DEQ under both balanced and imbalanced conditions. While extensively studied in traditional explicit neural networks, the \mathcal{NC} phenomenon has not received substantial attention in the context of implicit neural networks. We theoretically show that \mathcal{NC} exists in DEQ under balanced conditions.

We propose a novel neural network-based approach to modeling protein dynamics using an implicit representation of a protein's surface in 3D and time. Our method utilizes the zero-level set of signed distance functions (SDFs) to represent protein surfaces, enabling temporally and spatially continuous representations of protein dynamics. Our experimental results demonstrate that our model accurately captures protein dynamic trajectories and can interpolate and extrapolate in 3D and time. Importantly, this is the first study to introduce this method and successfully model large-scale protein dynamics. This approach offers a promising alternative to current methods, overcoming the limitations of first-principles-based and deep learning methods, and provides a more scalable and efficient approach to modeling protein dynamics.

Model predictive control (MPC) for linear systems with quadratic costs and linear constraints is shown to admit an exact representation as an implicit neural network. A method to "unravel" the implicit neural network of MPC into an explicit one is also introduced. As well as building links between model-based and data-driven control, these results emphasize the capability of implicit neural networks for representing solutions of optimisation problems, as such problems are themselves implicitly defined functions.

Learning a continuous and reliable representation of physical fields from sparse sampling is challenging and it affects diverse scientific disciplines. In a recent work, we present a novel model called MMGN (Multiplicative and Modulated Gabor Network) with implicit neural networks. In this work, we design additional studies leveraging explainability methods to complement the previous experiments and further enhance the understanding of latent representations generated by the model. The adopted methods are general enough to be leveraged for any latent space inspection. Preliminary results demonstrate the contextual information incorporated in the latent representations and their impact on the model performance. As a work in progress, we will continue to verify our findings and develop novel explainability approaches.

Forecasting physical signals in long time range is among the most challenging tasks in Partial Differential Equations (PDEs) research. To circumvent limitations of traditional solvers, many different Deep Learning methods have been proposed. They are all based on auto-regressive methods and exhibit stability issues. Drawing inspiration from the stability property of implicit numerical schemes, we introduce a stable auto-regressive implicit neural network. We develop a theory based on the stability definition of schemes to ensure the stability in forecasting of this network. It leads us to introduce hard constraints on its weights and propagate the dynamics in the latent space. Our experimental results validate our stability property, and show improved results at long-term forecasting for two transports PDEs.

Implicit neural networks have become increasingly attractive in the machine learning community since they can achieve competitive performance but use much less computational resources. Recently, a line of theoretical works established the global convergences for first-order methods such as gradient descent if the implicit networks are over-parameterized. However, as they train all layers together, their analyses are equivalent to only studying the evolution of the output layer. It is unclear how the implicit layer contributes to the training. Thus, in this paper, we restrict ourselves to only training the implicit layer. We show that global convergence is guaranteed, even if only the implicit layer is trained. On the other hand, the theoretical understanding of when and how the training performance of an implicit neural network can be generalized to unseen data is still under-explored. Although this problem has been studied in standard feed-forward networks, the case of implicit neural networks is still intriguing since implicit networks theoretically have infinitely many layers. Therefore, this paper investigates the generalization error for implicit neural networks. Specifically, we study the generalization of an implicit network activated by the ReLU function over random initialization. We provide a generalization bound that is initialization sensitive. As a result, we show that gradient flow with proper random initialization can train a sufficient over-parameterized implicit network to achieve arbitrarily small generalization errors.